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*24/06/2014*
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This is the introduction to the YCM project. Here you can find any information about the working infrastructure of our whole cell model project.
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This is the introduction to the YCM project.
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Here you can find any information about the working infrastructure of our whole cell model project.
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The main idea is to build a model of *Saccharomyces cerevisiae* in a modularised approach.
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The model is divided into different functional units (gene regulation, metabolism, cell cycle, etc.), these units are developed by dfferent task forces (groups).
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The model is divided into different functional units (gene regulation, metabolism, cell cycle, etc.), these units are developed by different groups.
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***
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###Simulation
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There are 2 different possibilities to simulate the whole model:
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**1. Merge**
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As long as every module uses only ordinary differential or algebraic equations the modules can be merged to one big model.
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As long as every module uses only ordinary differential or algebraic equations the modules can be merged to one big model.
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*COPASI* can also handle some species stochastically using a hybrid solver.
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**2. Consolidation**
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The modules can also be simulated independently in the framework. The results of these independent simulations are consolidated in update steps at regular intervals (0.1 s).
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The modules can also be simulated independently in the framework. The results of these independent simulations are consolidated in update steps at constant time intervals (0.1 s).
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***
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### Workflow
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To facilitate the development of the YCM model, we use different places to store information and the used data types:
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**1. Publications**
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