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****
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****
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## Content
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## Content
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* [COPASI_fit](#copasi_fit)
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* [COPASI_sim](#copasi_sim)
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* [COPASI_sim](#copasi_sim)
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* [GenerateODEsFromReactions](#generateodesfromreactions)
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* [GenerateODEsFromReactions](#generateodesfromreactions)
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* [GetSBMLReactions](#getsbmlreactions)
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* [GetSBMLReactions](#getsbmlreactions)
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***
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***
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## COPASI_fit
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**Parameter fitting for SBML file in COPASI.**
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This tool reads a data file (*data.csv*) and a config file (*config.csv*) to perform a parameter estimation in [COPASI](http://copasi.org/) and estimates the parameter in the SBML model file. The script can be run from the terminal
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#### ```python COPASI_fit.py sbml_file time_end```
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* *sbml_file*: filepath of SBML model
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* *time_end*: simulation runtime 0 -> *time_end*
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> **ATTENTION: The data and config file have to be present in the working directory of the script!!**
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## COPASI_sim
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## COPASI_sim
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**Simulation of an SBML in COPASI.**
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**Simulation of an SBML in COPASI.**
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The tool simulates an SBML file in [COPASI](http://copasi.org/) and saves the time course data in an [SBtab](https://sbtab.net/) file (*.csv*). The script cannot be run from the terminal, import the script and run the
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The tool simulates an SBML file in [COPASI](http://copasi.org/) and saves the time course data in an [SBtab](https://sbtab.net/) file (*.csv*). The script cannot be run from the terminal, import the script and run the
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